Protein Info for HSERO_RS08140 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 82 to 108 (27 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 226 to 254 (29 residues), see Phobius details PF07264: EI24" amino acids 8 to 219 (212 residues), 88.5 bits, see alignment E=3.3e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1637)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQN9 at UniProt or InterPro

Protein Sequence (280 amino acids)

>HSERO_RS08140 membrane protein (Herbaspirillum seropedicae SmR1)
MRLFIASFGRALLAQLHIRMLWLTVLPFVVSLALWALCLWLGLQPVIDWLQDYFVSHGMF
GEIGGMLAWFGMGALKTVLVPLLAMWTLLPLMIITALVFVGLFTIPAIARHIGARHYPML
EKRYGGSVAGSLWTSLWCFAVFTVLWISTIWVFLIPPLALVIHSLLWGWLTYRVMAYDTL
ADYASAEERRAVLHLHRWPLLAVGTVAGALGAAPTLLWLGGVLSVILLPALAALAIWLYV
VVFVFTGLWFQFYCLEALLRHRRGQAPDGPQGEIKDVTPR