Protein Info for HSERO_RS08125 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF21783: YNCE" amino acids 17 to 325 (309 residues), 327.5 bits, see alignment E=2.3e-101 PF10282: Lactonase" amino acids 102 to 298 (197 residues), 44.8 bits, see alignment E=2e-15 PF02239: Cytochrom_D1" amino acids 161 to 267 (107 residues), 26.7 bits, see alignment E=4.2e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1634)

Predicted SEED Role

"Surface antigen"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQN6 at UniProt or InterPro

Protein Sequence (327 amino acids)

>HSERO_RS08125 hypothetical protein (Herbaspirillum seropedicae SmR1)
MLRRIRQYFSLTLRAACVSAVLAVSAHANVVVVLNSGDASVSLLDETGEKELSTFSVGKE
PHHLMATPDNKSLIVASATGNQLLFLDPKTGAVQRKIRDIIDPYQIGFTPDQKWFVATGL
RLDRVDVYSYDGQDLKLSKRIPLPKTPSHIAFDNASTTAFITQQGSDQISAIDLATQQVK
WTMPVGKLPAGIIMTPDNKYLMVGIMGADYVEVIDWRTQKIVKKIKTGVGAHNFRGQGDK
RFVYVSNRVANTISVVDMTTLENVGTIKVPGGPDCMEVTSDGKTMWATLRWVKKVAVIDL
ASRSVTKVIPVGRSPHGIYLHNRAPDL