Protein Info for HSERO_RS08105 in Herbaspirillum seropedicae SmR1

Annotation: sodium:proton antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 50 (21 residues), see Phobius details amino acids 62 to 87 (26 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 161 to 183 (23 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 249 to 268 (20 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 364 to 386 (23 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details amino acids 443 to 465 (23 residues), see Phobius details PF16980: CitMHS_2" amino acids 27 to 466 (440 residues), 658.8 bits, see alignment E=3.7e-202

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1630)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQN2 at UniProt or InterPro

Protein Sequence (466 amino acids)

>HSERO_RS08105 sodium:proton antiporter (Herbaspirillum seropedicae SmR1)
IPAPFLFALCALLLPLPGWSAELDGAGLSLAWAIPFAGVLLSIAVLPLLMPALWHHHFGK
IAAAWALAFLLPFAALHGAHAALAISVHALVAEYLPFIILLTALFTVAGGICVRGNLHGT
PGLNTGLLALGTLLASIMGTTGAAMLLIRPLIRANDDRKHTVHVVVFFIFLVANAGGSLT
PLGDPPLFLGFLKGVDFFWTARHLLGPMAFLCGALLLIFYGLDRHFYLNREERRPLDPTP
DSAWQLEGRVNFLLLGAVVGLVLMSGLWKPGVATELMGAPLEWQNLLRDGALLGVILVSL
WLTPKSARSGNEFGWGPMLEVGKLFAAIFLTIAPVIAMLRAGEQGAFAAVVRAVTGPDGK
PDDVMYFWMTGLLSSFLDNAPTYLVFFNTASGDARELMGPLASTLAAISAGAVFMGANSY
IGNAPNMMVKAIAEERGIRMPSFFGYMAWSAGILAPLFIVMSFLFF