Protein Info for HSERO_RS08095 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13433: Peripla_BP_5" amino acids 32 to 98 (67 residues), 41.6 bits, see alignment E=1.4e-14 amino acids 151 to 365 (215 residues), 47.9 bits, see alignment E=1.6e-16 PF13458: Peripla_BP_6" amino acids 33 to 360 (328 residues), 215.6 bits, see alignment E=2.4e-67 PF01094: ANF_receptor" amino acids 42 to 343 (302 residues), 52.8 bits, see alignment E=5.1e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1628)

Predicted SEED Role

"ABC transporter substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQN0 at UniProt or InterPro

Protein Sequence (396 amino acids)

>HSERO_RS08095 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
LLGLAAALALPWGPSHAAEAIRIGEINSRHRLSTAGQAYRNGLALALEQINAAGGVGGRP
LQLVVREDDGDADQAARNARALISQDHVEVLTGSMLSDVALAVSREAARGRTVLVVGDAL
SDAITLDKGNRYTFRVRPSTYMQAAMLAEQAARLPGRRWAVVAPNYEYGQSAVASFKLLL
KQARPDVEFVSDQWPALGKIKADDVARAIRQSRPDGIFNATFGEDLQKFVQAGNRQQLFE
GVRVVSMASAGAPSLDPSQSEAIRDWLAIGYPWDQVSLPEHQRFLEAYLKRFSERPQLSA
VFGYTTMMAIAAGLKKSEGGDGEVLVEAMRGLQFGSPLGPVSFRALDQQASLGAFVGLVS
QKDGRSSMRDWRYLDGAAYLPPPAYVRSRRPASASK