Protein Info for HSERO_RS08075 in Herbaspirillum seropedicae SmR1

Annotation: ferredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 TIGR01944: electron transport complex, RnfABCDGE type, B subunit" amino acids 9 to 164 (156 residues), 217 bits, see alignment E=8.3e-69 PF04060: FeS" amino acids 20 to 52 (33 residues), 51.5 bits, see alignment 2e-17 PF14697: Fer4_21" amino acids 85 to 139 (55 residues), 66.5 bits, see alignment E=5.4e-22 PF13237: Fer4_10" amino acids 86 to 133 (48 residues), 28 bits, see alignment 5.2e-10 PF00037: Fer4" amino acids 86 to 107 (22 residues), 28.2 bits, see alignment (E = 3.5e-10)

Best Hits

KEGG orthology group: K03616, electron transport complex protein RnfB (inferred from 100% identity to hse:Hsero_1621)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQM3 at UniProt or InterPro

Protein Sequence (240 amino acids)

>HSERO_RS08075 ferredoxin (Herbaspirillum seropedicae SmR1)
VPPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVAR
LAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDA
LCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDA
RLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQA