Protein Info for HSERO_RS07695 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 250 to 276 (27 residues), see Phobius details amino acids 296 to 318 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 133 to 321 (189 residues), 121.4 bits, see alignment E=3.9e-39

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to hse:Hsero_1530)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPZ9 at UniProt or InterPro

Protein Sequence (324 amino acids)

>HSERO_RS07695 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MDLNRFLSARSGQRLAAALVPRLLQAVLVALLVGTLCFFMTRMLPGDMAYRIAAGRYGYD
MVTTEAALAVRDELGLDRPWFMALSEWWSRLLHLDLGVSQVSSQPVLAEIAHQLGPTLRL
SLLAMALSLLVGPTLGVLAGLHPGRWLDRATLALSVGLRALPSFLLGLILVLLFSVQLGA
LPAAGHGDHGGILLPALTLALGLAAVSCRVARDAMVQVRQSAYFAFALTKGLSPAQALAR
HGLRNVAAPVTAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVL
GLMFVLFNALVDAACAFLDPRGRA