Protein Info for HSERO_RS07145 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1439 transmembrane" amino acids 36 to 62 (27 residues), see Phobius details amino acids 1327 to 1349 (23 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 43 to 1372 (1330 residues), 777.2 bits, see alignment E=1.5e-237 PF13116: DUF3971" amino acids 582 to 872 (291 residues), 179.1 bits, see alignment E=1.5e-56 PF13502: AsmA_2" amino acids 1136 to 1370 (235 residues), 223.8 bits, see alignment E=2.4e-70

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1421)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPB7 at UniProt or InterPro

Protein Sequence (1439 amino acids)

>HSERO_RS07145 hypothetical protein (Herbaspirillum seropedicae SmR1)
MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY
AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP
QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ
REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPTSYAAPLDVRADF
SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN
FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS
IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD
LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP
GFSNIDGEIDATEKGGSVKLDSQELAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV
DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH
WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR
DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV
ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN
NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI
NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS
AQESLPLRFELLPLASADPLIEREELKLALGSSIASRYVRERVAATGAAWRVTSGGIGWN
QPAPSPSAGLKLALAADSLEVDPWLSLKNELVGPAVAEDASAASTRLGSGDIAQYLAPDQ
VSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTARL
SSLVIPKSTPTAENGAATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVTSVG
REWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGK
GKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLD
FRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVVVIP
EINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQVTP
VDGQRARELLEQGRGQGLPAMPAPAAPATPAAPAAAPTAPAGRRPANPQNIGPVINSGA