Protein Info for HSERO_RS07135 in Herbaspirillum seropedicae SmR1

Annotation: methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 PF05148: Methyltransf_8" amino acids 23 to 156 (134 residues), 32.5 bits, see alignment E=3.8e-11 PF13489: Methyltransf_23" amino acids 30 to 189 (160 residues), 48.4 bits, see alignment E=3.9e-16 PF02390: Methyltransf_4" amino acids 48 to 163 (116 residues), 24.7 bits, see alignment E=6.5e-09 PF05175: MTS" amino acids 49 to 175 (127 residues), 27.3 bits, see alignment E=1.2e-09 PF01209: Ubie_methyltran" amino acids 49 to 156 (108 residues), 44.8 bits, see alignment E=4.6e-15 PF13847: Methyltransf_31" amino acids 50 to 152 (103 residues), 76.3 bits, see alignment E=1e-24 PF13649: Methyltransf_25" amino acids 50 to 144 (95 residues), 89.8 bits, see alignment E=6.9e-29 PF08241: Methyltransf_11" amino acids 52 to 148 (97 residues), 95.1 bits, see alignment E=1.5e-30 PF08242: Methyltransf_12" amino acids 52 to 146 (95 residues), 66.4 bits, see alignment E=1.5e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1419)

Predicted SEED Role

"FIG025233: SAM-dependent methyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IPB5 at UniProt or InterPro

Protein Sequence (235 amino acids)

>HSERO_RS07135 methyltransferase (Herbaspirillum seropedicae SmR1)
MPPAVPEHVPETAFGLWFLRTPTWTLHVLERAMQDLERLIPARRSSYPVVADVGCGWGRS
LKKLHQRFAPQRLIGMDIDPAMIAAARSETEAEGLRAEFIQCSSSRMRLEDNSVDLLFCH
QTFHHLIDQEEAIREFYRVLKPGGILLFAESTKRYIHSWIIRLLFRHPMEVQKTAGEYLA
LVRSAGFEVAPQSISYPYLWWSREDLGILERVFGIKPRAEREETLINLVAVKPQQ