Protein Info for HSERO_RS06855 in Herbaspirillum seropedicae SmR1

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 transmembrane" amino acids 174 to 193 (20 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 269 to 287 (19 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 24 to 162 (139 residues), 80.8 bits, see alignment E=2.4e-26 PF07695: 7TMR-DISM_7TM" amino acids 174 to 368 (195 residues), 64.4 bits, see alignment E=3.7e-21 PF00512: HisKA" amino acids 427 to 488 (62 residues), 52.6 bits, see alignment 9.7e-18 PF02518: HATPase_c" amino acids 537 to 651 (115 residues), 97.3 bits, see alignment E=1.9e-31 PF00072: Response_reg" amino acids 680 to 794 (115 residues), 47.8 bits, see alignment E=3.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1365)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IP61 at UniProt or InterPro

Protein Sequence (880 amino acids)

>HSERO_RS06855 histidine kinase (Herbaspirillum seropedicae SmR1)
VHAPRAGALSIDFAQVGEAATITSALWLLHDPGAHLGVQEARAQPDWRPVGVSVLKLGYD
EGAYWLYGTLRNAAEVPVTRWLGLGSARLEDVQLHLLDTDHGGDASAPAQMQQAGTRFPL
GQRSVRSLRPFFTVTLAPGEERQFMLRVASDSIIDISVALWEPAAMRQEEGRELAIQGFL
LGLSLLLAAYALVQGLVWRDRSLMLMAAWLVTAQAYICAFQGYLYRYLLEAGSPWIVHAP
ATLGCLATLIYLRMSQSLVELEQLWRWKTLYRCMILALGGVTLWTALGDYRDAAPVANAS
AGLSYLAWLASMLHAWRRRLDNARMLVLSFALAWLAMSMKMLELNGVFDGDLLPDWRFAA
LFQIGLLCMTSVIVTGRAVDLHRKHEQMQWTMLYLRVREQLKLEKAVAARTQELRQALQA
ADEANLAKSGFLTRISHDLRTPLTSILGFADMIQASGGPHAGHGRIIMRSARHMLTMVND
LIDYARGDPLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISPDLPPVLALDARR
LHRILGNLLDNAAKYTREGRIGLHVQWQADHADAGKGALQIEVSDTGCGIAPQFQSRIFE
PFERADADRRQPGIGMGLAIVRLWVQRMGGSIVLESQPGMGTRMHLQLPAERGSEQDIAS
HHVQEHSSTRVLIDGAGRQVVVVEDSPEIARLLSDQLSSLGFAVSVFGDGETAIAHLSAL
TMDQEAPALVLTDYLLPGVHGGAVLQAARRLLPEVPVLLLSATLHACEVELDGDLRFDGS
LLKPVNFSELQEMIAQLLQLPLLGSTASSASSGGSVGEVVAMPPEALLQAALAMIADGAV
SDLIDWCETLGHEHPQCSQFQAQALEQISQGHLARLRAMC