Protein Info for HSERO_RS06580 in Herbaspirillum seropedicae SmR1

Annotation: benzoate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details amino acids 29 to 33 (5 residues), see Phobius details transmembrane" amino acids 25 to 28 (4 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 144 to 161 (18 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 206 to 231 (26 residues), see Phobius details amino acids 246 to 272 (27 residues), see Phobius details amino acids 289 to 312 (24 residues), see Phobius details amino acids 319 to 339 (21 residues), see Phobius details amino acids 354 to 382 (29 residues), see Phobius details PF03594: BenE" amino acids 7 to 380 (374 residues), 444.1 bits, see alignment E=2.1e-137 TIGR00843: benzoate transporter" amino acids 10 to 381 (372 residues), 443.4 bits, see alignment E=3.7e-137

Best Hits

Swiss-Prot: 55% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to hse:Hsero_1314)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IP10 at UniProt or InterPro

Protein Sequence (389 amino acids)

>HSERO_RS06580 benzoate transporter (Herbaspirillum seropedicae SmR1)
MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPQAQLVSWVWGISMGAGVSGLL
LSGWFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFEKILAFI
PKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRYGIVVVALTGFAV
AFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH
PSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIANGVFYLI
GGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEGDYVEPSVITFLATASGM
TLFGLGAAFWGVMVGMAAYWLIGRPVQKK