Protein Info for HSERO_RS06485 in Herbaspirillum seropedicae SmR1

Annotation: filamentous hemagglutinin protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2658 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 2220 to 2240 (21 residues), see Phobius details amino acids 2261 to 2284 (24 residues), see Phobius details PF05860: TPS" amino acids 39 to 300 (262 residues), 218.6 bits, see alignment E=1.4e-68 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 76 to 171 (96 residues), 79.2 bits, see alignment (E = 1.7e-26) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 323 to 357 (35 residues), 12.9 bits, see alignment (E = 8.9e-06) amino acids 439 to 473 (35 residues), 6.6 bits, see alignment (E = 0.00083) amino acids 474 to 518 (45 residues), 19.1 bits, see alignment (E = 1e-07) amino acids 538 to 579 (42 residues), 18.5 bits, see alignment (E = 1.6e-07) amino acids 579 to 620 (42 residues), 9.9 bits, see alignment (E = 7.7e-05) amino acids 631 to 656 (26 residues), 6.6 bits, see alignment (E = 0.00084) amino acids 705 to 732 (28 residues), 12.7 bits, see alignment (E = 1e-05) amino acids 912 to 942 (31 residues), 10.4 bits, see alignment (E = 5.4e-05) amino acids 998 to 1015 (18 residues), 7.9 bits, see alignment (E = 0.00034) amino acids 1191 to 1229 (39 residues), 16.1 bits, see alignment (E = 9.1e-07) PF13332: Fil_haemagg_2" amino acids 1260 to 1301 (42 residues), 15.8 bits, see alignment (E = 1.2e-06) amino acids 1331 to 1382 (52 residues), 19 bits, see alignment (E = 1.3e-07) amino acids 1400 to 1462 (63 residues), 22.8 bits, see alignment (E = 8.8e-09) amino acids 1473 to 1544 (72 residues), 22.2 bits, see alignment (E = 1.3e-08) amino acids 1549 to 1706 (158 residues), 48.2 bits, see alignment 1.4e-16 amino acids 1778 to 1950 (173 residues), 141.3 bits, see alignment 3.3e-45

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INZ0 at UniProt or InterPro

Protein Sequence (2658 amino acids)

>HSERO_RS06485 filamentous hemagglutinin protein (Herbaspirillum seropedicae SmR1)
MSKHMIDTIHFQSGRHGVLRRAMAALMIMLCVVPPGYPQIVADPNAGAGKRPVVDNTANG
RPLVQIATPSAAGVSHNQYSQFNVGPNGAILNNARDVVLTQQGGYVGANPNLQGGAARVI
LNEVTSTSPSQLRGYTEVAGQRAEVIIANPNGISCDGCGFINTSRGVLTTGVPLFGGNGS
LEAFRVSRGAIQIGSGGLNGANTDQLDLIARSVQVNGELWGNRLNLVTGANRVNYGDLGL
SVIAGEGNAPTIGVDVARMGGMYAQKIMLVGTENGVGVRSLGTLAAQAGSFTLSSQGQIA
LSGKTSASDDIVLKSAVGTSNDGVLYAGRNAQLQGGVIENAGTLSAQGNLDITAAQLRST
GTLAAGVDQAGNVAQAGNLTVTASGDVLATGVNRAGADLQLVGGKIDLSHSSSSAGRKLG
AQASDALTLGGATVETLAGDLELGGATITLDGAKLTSSADARINAVAGLSNRGGEITSAG
AMNVTAASVDNSAGMISAATGGAGVLSLRSAGSISNGQGRIAAGAALNLAAASIQGQGSV
IANGDATLSLQSLNNEAGSLIQSNRDLRITTSGATGNQGALKAIGALNLTASQIDNAAGG
DISAAATTLQALNGDINNAGKIGGNTIATTSNALNNQGSMIGGDVTINADRLNNSGAAAA
IAATNSVQAFVRSALTNQDNALIYSLGKLVIAADATQSAAGDYLHRTGTLTNSSATIEAG
GDLAVSADTIVNKRSTLVIARDIFDGTESWQKYNYYWRSWGSGMSGPDSAGLMAAVTRTL
PFNDASAFGSRYGSILQLDLSSNRALVQFQGSNQLWVSYKAIKQNADGSYDMTFYEGKNC
DGSTLCPYQQMVWREYTGSRVQDQFDPSRYTSPAELKGIGTNGESAYDFRERSYNGSNYH
DAITAMSDAAKLNASGRITINTAALTNDASDIIAGGALTINGANGSAASGGVVNNIGYSI
NRTAIGTAVDHYDRHVGHHTYTTLNLTEVTALQTIDANIQSNQAVSISAQNLNNTTVGAA
TVPTRAGGVGHANITLPAGGLFTVRPEPGQRYLVETDRRFTDYKTFLGSDYMLGRLTMDP
SMTQKRLGDGFYEQKLINDQIAQLTGKKFLDGYTNAEAQYKALMDSGVASAASFKLTPGI
ALSADQMAALTSDIVWMVDTEVTLADGSRQHALVPTVYLAHGGSATLQASGALIGGRDVT
LAADTVNNSGIVRAEDKLAVAARDINNTGGELRGDKVDVLATETLNIGTDFQNYGRQGSV
TGRQVSLAANDINIIGAKIKADDTLKLAAQNNLTIAAATAQHDVKLTWSGAGEREENHGM
MRNGGVTAQLQQALGSTIEAGGDASFAAGRNIAVRGSSIDVKGNAALLAGGSVEVSAVKT
ATDSVVTGRSDRYDLNVVGHTENLTTSQIAAGKGLSIVASGQNGSGDITLAASRLSSKEG
EVTLNAAGDISIGAMQKNNDNRIDERGGKAWMKTHDSSSVAAGSLIEGEKGVNLIATGRS
DAKVSVAGSDIYSNGTIAIQAKGDVTVAETRSSSDEWQQAHSESRGFLSRSSSDRTDQVR
QDMANGSTLSGNKVVIDAGRNIAVRGSEVVSTELTSLRAANDVSITTTQNFTEQSHYKED
RKSGLMGAGFGISIGSQGQMANGNGSSVTNNASTVGSVNGNVNIIAGNAFRQIGSQVVAP
QGDINILAKSVDIGAAYDASVYTQENKFKQSGLTLAINSPVISVLQTGQQLIQAGQKTPD
KRMQALAAATLAKNAYDAGAALIDKPTDTSGVKITLSLGSSQSSNKVTQASSQAVGSTVA
AGGAVNIVASGGPRSDINVVGSAISAGGDVSLVADHEINLLAAQSAYSQHGNNNSSGASI
GIGFAMGGSQNGFTLELGANRARGNLDGDDLVNKASTISAGNQASLISGGDTNVRGSTVS
AKTVAAAIGGDLNIESLQDKSTYGSKQSSAGVGLSLCIPPFCYGASSVSGSLSGSKAKGD
YQSVVTQAGIKAGDGGFRLVVAGNTDLKGAVISSTAKAIEDGKNFLQTGTLTYSDISNHD
AYEASGYSVSGSMSSQLGDQSKAKTEADKAAANSRTGPGGSPGYSDTGGSQSSVTRSGIS
GGTVIITDEQGQKAATGQSAEQILASLNRDVDSSKDSSGALSKAWDGEALRQQVEAEAQI
RQAFGQTVAKSIGDYADTKERDLKNAAKQAEQDGDAEQAAKLRAEAARWGEDGTARAAVH
AAAGALSGGLAGAASAAAVSKLMPSLAEQIKKMGLPSELEGVVAAAAASGLGAIIGGSAG
AATAVTVDLNNRQLHQSERALLAKLAKEKAAAVCGQDADCTTRQTLFWSDMLERVANGKV
DNVEAAKNMDYLAKLANASAAPDSEGARGGLEAYLNAWRSAEALLQPYVGTPIVTNGVPA
FGDGSAQTYFSATEAQRSDRFLNTFLGSFPDPLAAGRPERDADRVDRFLAQNGSALKDYF
FEENLLGGKLAAKTLGLLGRLLGNETDLFFAGTVSPSAKGYIGVGKVTMEGYSVKLSNAE
MSLLQQIDKLETTKAQGELREMVSDFYFSRNGYKSFDGKCGVNCFDGVYLKGNTVFINEV
KPLSNNGSISLNGDTPGLPTQMTDAWIRNAADRLEQTGRSDAIKTAEMIRSALSDGRLVK
VVTAVDSKSITLIKLARD