Protein Info for HSERO_RS06435 in Herbaspirillum seropedicae SmR1

Annotation: amino-acid transporter transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 96 to 120 (25 residues), see Phobius details amino acids 126 to 151 (26 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 202 to 221 (20 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 294 to 317 (24 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details amino acids 378 to 399 (22 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details amino acids 442 to 463 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 19 to 430 (412 residues), 81.7 bits, see alignment E=5.6e-27 PF00324: AA_permease" amino acids 48 to 436 (389 residues), 91 bits, see alignment E=7.2e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1281)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INX7 at UniProt or InterPro

Protein Sequence (483 amino acids)

>HSERO_RS06435 amino-acid transporter transmembrane protein (Herbaspirillum seropedicae SmR1)
MSAPARSTPDHTGLKKDAIGWFGIFLMVITTNGPLTSMGGGVPVSITLGNGIGLPGSYVV
VCLAYLLFAIGFCAMTPYVENGGAFYAYITKGLGSVAGVGSACIAVLSYISILLACYAML
GHFMQVMMAAMGIAAPWWIWALVCAVLAHLLCVRGIEFSGRLLLLLMLCEVGAILGADVL
ELLRQHFTGAVVSFAPFWPQSVFTAGFGPSLIFVVASFMGFETAAIYAQEARDPQRSVPR
AMYFSIVFIGVLYAASIFLMLNHFGVDHAVQVAANDPGGMWLSMFQTLAGPTAARIGAVL
VITSLFAAVLSFTNVVARYWHALSMRGLVWTMLSRTHPRHRSPYVASAITMCISCALILM
CAMAGLDPMLQALPWASVPSAIGVLTCQVLAALAVASFFRRHQSSVSAWRGLVAPVCSAV
VLLYFLWQMIAHVQLLSGLPSVPSYLLAVSILIAGGLASFYACRLRRSSPDVFARLSELV
KQQ