Protein Info for HSERO_RS06405 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 43 to 64 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 103 to 127 (25 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 220 to 239 (20 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 308 to 331 (24 residues), see Phobius details amino acids 342 to 362 (21 residues), see Phobius details amino acids 371 to 390 (20 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 358 (338 residues), 101.2 bits, see alignment E=3e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1276)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INX2 at UniProt or InterPro

Protein Sequence (407 amino acids)

>HSERO_RS06405 MFS transporter (Herbaspirillum seropedicae SmR1)
MRIATVNRKPWLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVW
GVAQSLAGALTDRHGPAPVVAFGAVCYAIGLALTALAPNGAVLVLGMGVFIGVGISCTSF
GVVLPAVGRSVPAERRSSAMGLVSAGGSLGQVLMLPLVQGLRATSGMSLALMVLALLVLA
VAPLGLALARTGPVAADAPRLDYSVREVIAQATAHRGYQLLTLGFFACGFQLAFIATHLP
GYLELCHMPMGLAATALALIGLFNMAGSWACGWLGGRYRPQRVLGWLYLVRSTAIGLFFI
APKSSQSVTLFAAVMGLTWLGTVPLTTGLVARLFGTAHMGTLFGVCFLSHQVGSFLGAWL
GGWMLEVTGSYSLLWMATFVVGIVAALLHFPIEEADGRRGGGRLARH