Protein Info for HSERO_RS06315 in Herbaspirillum seropedicae SmR1

Annotation: phosphate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 37 to 67 (31 residues), see Phobius details amino acids 87 to 118 (32 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details amino acids 177 to 202 (26 residues), see Phobius details amino acids 244 to 267 (24 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details TIGR02138: phosphate ABC transporter, permease protein PstC" amino acids 36 to 328 (293 residues), 313 bits, see alignment E=8.2e-98 PF00528: BPD_transp_1" amino acids 124 to 324 (201 residues), 59.7 bits, see alignment E=1.6e-20

Best Hits

Swiss-Prot: 63% identical to PSTC_SHIFL: Phosphate transport system permease protein PstC (pstC) from Shigella flexneri

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 100% identity to hse:Hsero_1256)

MetaCyc: 63% identical to phosphate ABC transporter membrane subunit PstC (Escherichia coli K-12 substr. MG1655)
ABC-27-RXN [EC: 7.3.2.1]; 7.3.2.1 [EC: 7.3.2.1]

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.3.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INV2 at UniProt or InterPro

Protein Sequence (336 amino acids)

>HSERO_RS06315 phosphate ABC transporter permease (Herbaspirillum seropedicae SmR1)
MSNTEVKKSTTDTESAQVAREKLMAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLI
IGAAPAFQAFGPGFITRVEWDPTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTE
ICPAKLRRPLGTCVELLAGVPSIIYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFS
GPTMGIGILTAGLILSVMIIPFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPY
TKTGVVGGVMLGLGRALGETMAVTFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLH
VSSLFALGLILFVITFIVLSAAKIMLMGMTRKEGAK