Protein Info for HSERO_RS06210 in Herbaspirillum seropedicae SmR1

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 96 to 115 (20 residues), see Phobius details amino acids 164 to 188 (25 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 230 to 261 (32 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 380 to 404 (25 residues), see Phobius details amino acids 415 to 436 (22 residues), see Phobius details amino acids 447 to 480 (34 residues), see Phobius details PF02417: Chromate_transp" amino acids 93 to 259 (167 residues), 132.9 bits, see alignment E=5.9e-43 amino acids 308 to 474 (167 residues), 130.8 bits, see alignment E=2.7e-42 TIGR00937: chromate efflux transporter" amino acids 99 to 473 (375 residues), 334 bits, see alignment E=8.6e-104

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 100% identity to hse:Hsero_1235)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8INT1 at UniProt or InterPro

Protein Sequence (482 amino acids)

>HSERO_RS06210 chromate transporter (Herbaspirillum seropedicae SmR1)
LHSSIAQALYRQIGTACRRSRANWGFLSGPGGCRSCAAAEKCFIFRVLASKIAPISAPIR
PLHFALALPMPAQPPHSVTANQPRASGSPGACWEVFLVFLRLGLTSFGGPAAHLGYFRTE
FVARRGWLSEAAYADLVAMCQFLPGPSSSQVGMAIGVLRAGYGGALAAWLGFTLPSALLL
MGLALSVLQQAHWLSAEVVHGLKIVAVAIVAQAVWGMAGSLCRGLQRQVITLAAALAALL
MSGALAQLAIIVTAALAGWLLLKSVPTARLDDLPPTLNRRVGAACLLLFLGLLLGIPALA
AWHPASWLQLTSIFYRVGSLVFGGGHVVLPLLQAELVPAGWLDKDVFLAGYGAAQAVPGP
LFTLAAYLGVVMSSWPNGVAGGLLCLVAIFTPSFLLVIGLLPFWDSVRRNGPMQAALAGV
NAAVVGLLLAALYQPVWTSAIHSLRDLLVALAALAALVYLRMPSWAVVLLVVLAVLLPGL
AG