Protein Info for HSERO_RS05855 in Herbaspirillum seropedicae SmR1

Annotation: flagellar motor protein MotA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 109 to 133 (25 residues), see Phobius details amino acids 147 to 171 (25 residues), see Phobius details PF01618: MotA_ExbB" amino acids 66 to 186 (121 residues), 112.9 bits, see alignment E=4.4e-37

Best Hits

KEGG orthology group: K03561, biopolymer transport protein ExbB (inferred from 100% identity to hse:Hsero_1167)

Predicted SEED Role

"Ferric siderophore transport system, biopolymer transport protein ExbB" in subsystem Campylobacter Iron Metabolism or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1R3 at UniProt or InterPro

Protein Sequence (201 amino acids)

>HSERO_RS05855 flagellar motor protein MotA (Herbaspirillum seropedicae SmR1)
LLAIILAAGWPIWPLLIASIIGLALVIERLVYLRRSRILPPDLLNQVVRVYQSGRITDDV
ADKLEQNSPLGHVLAAGLRNVDAPREVMKEAIEEAGQAAAHRLERFLTTLGTIASLAPLM
GLFGTVVGMIEIFASQNAAGTNPAQLAHGISIALYNTGFGLAIAMPALVFYRHFRALVDG
FVVDMEQQAVKFVDIVHDVRR