Protein Info for HSERO_RS05390 in Herbaspirillum seropedicae SmR1

Annotation: twitching motility protein PilT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 PF01850: PIN" amino acids 2 to 125 (124 residues), 72 bits, see alignment E=3.3e-24

Best Hits

Swiss-Prot: 39% identical to VPC22_MYCTU: Ribonuclease VapC22 (vapC22) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

KEGG orthology group: None (inferred from 99% identity to hse:Hsero_1076)

Predicted SEED Role

"FIG00454931: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J1H2 at UniProt or InterPro

Protein Sequence (131 amino acids)

>HSERO_RS05390 twitching motility protein PilT (Herbaspirillum seropedicae SmR1)
VIILDTHALVWWVGADPTLSRKARQVIEKEMAGGDIIISAISAWEIAMLVEREKLVLSME
VERWMATVAEIEAVRMVPVDVEVSVKAVALPGEFHKDPADRMIVATARKFSIPLVTKDEK
IRAYPHVKTIW