Protein Info for HSERO_RS05200 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 35 to 52 (18 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 191 to 209 (19 residues), see Phobius details amino acids 228 to 248 (21 residues), see Phobius details amino acids 254 to 271 (18 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 333 to 351 (19 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details amino acids 385 to 402 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 62 to 395 (334 residues), 145.4 bits, see alignment E=9.2e-47

Best Hits

Swiss-Prot: 41% identical to XYLH_HAEIN: Xylose transport system permease protein XylH (xylH) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K10547, putative multiple sugar transport system permease protein (inferred from 100% identity to hse:Hsero_1039)

Predicted SEED Role

"L-arabinose transport system permease protein (TC 3.A.1.2.2)" in subsystem L-Arabinose utilization (TC 3.A.1.2.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J101 at UniProt or InterPro

Protein Sequence (405 amino acids)

>HSERO_RS05200 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MESIDMSKKPAAAAAGGAAEKKDYGSFLKNNMREYGMLMSLVAIMAFFQIMTDGTLMRPL
NLTNLVLQNSYIVIMALGMLMVIVAGHIDLSVGSVVGLIGALAAVLMVDYGWGFVPASIV
CLIAGGLIGAAQGYWIAYFKIPSFIVTLAGMLVFKGMALALLQGQSLGPFPQTFQMLSSG
FIPELTGNTTFRTTSLIVGVIAAVVLILVKLHGRRKQTKHGMEDEPVLFFLLKNGVFAAA
IIAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAKLSGIKTER
VSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASGGVGKVMGA
VIGAFVMGVMNNGMSIMGIGIDYQQMIKGFVLLMAVCFDVYNKNK