Protein Info for HSERO_RS05185 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 signal peptide" amino acids 12 to 12 (1 residues), see Phobius details amino acids 35 to 36 (2 residues), see Phobius details transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 166 to 188 (23 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 254 to 293 (40 residues), see Phobius details amino acids 300 to 325 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 45 to 312 (268 residues), 140.9 bits, see alignment E=2.3e-45

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to hse:Hsero_1036)

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YjfF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0Z8 at UniProt or InterPro

Protein Sequence (340 amino acids)

>HSERO_RS05185 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MMLVSSLRRASHAPWFTSMVTVVLLVVMLVAGALGYDGFLSPQVMLNLLIDNAFLLVVAI
GMTFVILSGGIDLSVGSVLALTTMVAAFLLQNWHWHPLLVIVTVLLMGAGFGAAMGAMIH
YFKLQAFIVTLAGMFLARGLCYLISINSITIDDPLFTTLSQTRLELAGLFISPSVVIALF
MLALAIWMAHCTRFGRAVYAIGGNENSALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFY
MLSGYGLHAQGVELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSW
WTKIFIGALLFVFCVAQRVISLGALRGKPAGSAKAAPAGA