Protein Info for HSERO_RS05180 in Herbaspirillum seropedicae SmR1

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 64 to 87 (24 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 128 to 152 (25 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 189 to 217 (29 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 304 to 324 (21 residues), see Phobius details amino acids 331 to 350 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 65 to 342 (278 residues), 138.4 bits, see alignment E=1.3e-44

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to hse:Hsero_1035)

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YtfT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0Z7 at UniProt or InterPro

Protein Sequence (359 amino acids)

>HSERO_RS05180 sugar ABC transporter permease (Herbaspirillum seropedicae SmR1)
MSASMDSKLIPDTAASAGSPMLAGLLRHPLVRPLGALAVLLLIDFLLVPGFFKLEIKDGH
LYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAILIGGKMVVVDGV
SQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTDGQ
IVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLALLMKKTALGLFIESVGINPVASRLA
GIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLAGG
KFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPQFRRMLRMSKS