Protein Info for HSERO_RS05030 in Herbaspirillum seropedicae SmR1

Annotation: hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 PF06500: FrsA-like" amino acids 123 to 247 (125 residues), 23.4 bits, see alignment E=3.6e-09 PF00326: Peptidase_S9" amino acids 174 to 381 (208 residues), 45.8 bits, see alignment E=7.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1004)

Predicted SEED Role

"Bll6428 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0W6 at UniProt or InterPro

Protein Sequence (386 amino acids)

>HSERO_RS05030 hydrolase (Herbaspirillum seropedicae SmR1)
MFRYFPTNYVWNLSVDLAIEMGARIGEIEAMCAPLQEAARQPDAEGTAAFRATWADMAEK
LCSLAAEDEMRGRLLSAGEKYKRAASYLLTCERLQGHGAPGRLELYKRFLEVFQRGIALA
GENCERVEIAYEGRVISGLYTRARNVQGPAPVLVQLNGLDSTKEMKYLVGLPGWLAERGV
ASLVIDQPGTGEALRLHGLTARFDAEHWARHVVDWLEQREDVDPTRIGCEGVSLGGYYCP
RVVAMEPRFACGVVWGANHDWRDVQKRRLEKEGDFPVPHYWQHVCWVWGAKDIDDFMRIA
EDVHLDGVVEKIRVPFLVTHGEKDSQIPLKWAHRTYEQLVNSPKRELKVFTDREGGVQHA
SFDNSINAGHYIADWVAETLGGRTKR