Protein Info for HSERO_RS05010 in Herbaspirillum seropedicae SmR1

Annotation: filamentous hemagglutinin outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1568 transmembrane" amino acids 40 to 55 (16 residues), see Phobius details PF13018: ESPR" amino acids 8 to 53 (46 residues), 48.3 bits, see alignment (E = 2.2e-16) PF05860: TPS" amino acids 52 to 307 (256 residues), 127.7 bits, see alignment E=1.6e-40 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 87 to 160 (74 residues), 77.9 bits, see alignment 2.1e-26 PF18657: YDG" amino acids 609 to 680 (72 residues), 45.9 bits, see alignment 1.1e-15 amino acids 692 to 768 (77 residues), 57.4 bits, see alignment 2.7e-19 amino acids 778 to 852 (75 residues), 57.5 bits, see alignment 2.5e-19 amino acids 862 to 941 (80 residues), 67.4 bits, see alignment 2.1e-22 amino acids 949 to 1028 (80 residues), 64.3 bits, see alignment 2e-21 amino acids 1036 to 1112 (77 residues), 69.1 bits, see alignment 6.4e-23 amino acids 1122 to 1200 (79 residues), 59.2 bits, see alignment 7.8e-20 amino acids 1209 to 1288 (80 residues), 65.9 bits, see alignment 6.1e-22 amino acids 1296 to 1370 (75 residues), 62.5 bits, see alignment 7.2e-21 amino acids 1379 to 1457 (79 residues), 56.7 bits, see alignment 4.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_1000)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0W2 at UniProt or InterPro

Protein Sequence (1568 amino acids)

>HSERO_RS05010 filamentous hemagglutinin outer membrane protein (Herbaspirillum seropedicae SmR1)
MRGHASLNRIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALLVSPLLAQAAPVGGQ
VTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAVNRIYDTNPT
RFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAARNFSGSGTGSI
INQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANASLVKLQVNQNT
LNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVNGRIVLDGGNLAT
VSNSGTLDASGKNAGQTGGTVKVLGKEVTLASGSNIDISGDAGGGSAFVGGNFLGAGPEQ
NALNTTVAAGATINADALSNGNGGNVAIWSDGNTSFNGSITARGGKDGGNGGQVETSGEH
LTVGKPAFVNTLAPKGKVGSWLLDPQDMRIYYDQDPNSHGDISGAQITAALQYSDVTIKT
GPTVSCTNVSGCGAGTSGNGDINLVDGVLIGGMNWTTGTTLTLSAYRDINLGYATFIDAT
GGNGNVVLRADNTGTGTGSVKFDANALGVQGNNGYTKIYYNPDDYLHPTDFSLFVTMTGS
GQFNAYMAINLTAGIVSKTYDGTTTATLSGAVNPISTPAGVTINTSGAIATFNDRFAGTN
KAVTISGVTLGGSEAGKYFLNGLDSKTATINKANLTLNGGLTANDKTYNGTTTATISGTA
SVAALGSDSVSVSLSSANFSDKNVGTNKAVTATYVLTGSDSGNYNLIQPTGLTANINKAN
VTVTGATANSKTYDGTTTATVSGATVAAFGSDVVSLALSSANFSDKNAASNKGVTATYTL
TGTDANNYNLIQPTGLTATINKANLTVGGISAADKTYDTTTAATLTGTASVVALGSDVVS
VSGTGVGTFSNKNAGSNKVVTVSGYTLGGADAGNYNIVQPTGVTATINKANLNVSGITAN
NKTYDATTVATLAGTASVTALGSDVVSVTGSGVGSFANKNAGNAKAVTVSGYSLTGSDAG
NYNIVQPTGLVATISKANLAVGGISASDKTYDATTTATLTGVASVAALGSDVVSVSGGVG
TFSDKNAGSNKAVTVTGYTLGGADAGNYNVIQPTGLTATINKASLTVGGLSAADKTYDTT
TVATLTGTATVAALGSDVVSLTGTGVGAFANKNAGANKAVLVSGYSLTGSDASNYNIVQP
SGLSATINKADLHVTGISAADKTYDATTAATLSGTASVSALGSDVVALGGAGVGNFSNKN
AGSNKAVTVTGYTLTGTDAGNYNVVQPTGLTASISKANLTAGSVSVNNKVYDGTTAATVS
GTASVTALGSDSVSVIAGGVFSDKNVGNGKTVTVTYTLSGTDAGNYNVIQPAAQTANITP
ASLTVSGITANDKPFDGTTTASVNAAGAILTGKVAGDVVTVAATGVFSDPAVGNGKLVNL
SSTYGGADVGNYTITDQATTTASITSALPPAAPSASVPAPVRNVLAQVQSSVLPPQAASQ
PQSLDLSSTLTVRAEGREGQQSDGSANDAPRRANTIELGGANVGGAGPVLQIRNGGTQLP
DNAFRTTE