Protein Info for HSERO_RS04980 in Herbaspirillum seropedicae SmR1

Annotation: methionine ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF00005: ABC_tran" amino acids 18 to 165 (148 residues), 128 bits, see alignment E=6.2e-41 PF09383: NIL" amino acids 269 to 340 (72 residues), 88.3 bits, see alignment E=3.6e-29

Best Hits

Swiss-Prot: 73% identical to METN_CUPMC: Methionine import ATP-binding protein MetN (metN) from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)

KEGG orthology group: K02071, D-methionine transport system ATP-binding protein (inferred from 100% identity to hse:Hsero_0994)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0V6 at UniProt or InterPro

Protein Sequence (345 amino acids)

>HSERO_RS04980 methionine ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MIEIQAVTQRFGNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVL
DGQDLTSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPL
LELVGLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLR
KINKELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDV
IAHELPKGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHG
QIDEIQGQAFGSLAILANGTQDNINQAMQYLREQGVVVEELNHVI