Protein Info for HSERO_RS04885 in Herbaspirillum seropedicae SmR1

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details amino acids 28 to 29 (2 residues), see Phobius details transmembrane" amino acids 26 to 27 (2 residues), see Phobius details amino acids 30 to 31 (2 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details PF02743: dCache_1" amino acids 38 to 258 (221 residues), 82.1 bits, see alignment E=6.6e-27 PF00672: HAMP" amino acids 294 to 347 (54 residues), 40.3 bits, see alignment 5e-14 PF00015: MCPsignal" amino acids 411 to 566 (156 residues), 181.8 bits, see alignment E=1.6e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0976)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0T8 at UniProt or InterPro

Protein Sequence (606 amino acids)

>HSERO_RS04885 chemotaxis protein (Herbaspirillum seropedicae SmR1)
MKSTSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWS
DSKKLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTK
RPWYQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVA
IKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGR
RQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLG
RLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTI
HAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIA
TQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA
VVASEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVA
EITAASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL
RDSRAG