Protein Info for HSERO_RS04790 in Herbaspirillum seropedicae SmR1

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 29 to 418 (390 residues), 610.5 bits, see alignment E=5.9e-188 PF02771: Acyl-CoA_dh_N" amino acids 43 to 141 (99 residues), 40.1 bits, see alignment E=6.3e-14 PF08028: Acyl-CoA_dh_2" amino acids 262 to 394 (133 residues), 85.7 bits, see alignment E=5.4e-28 PF00441: Acyl-CoA_dh_1" amino acids 264 to 391 (128 residues), 30.9 bits, see alignment E=4.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0956)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0R8 at UniProt or InterPro

Protein Sequence (419 amino acids)

>HSERO_RS04790 acyl-CoA dehydrogenase (Herbaspirillum seropedicae SmR1)
MSAVLAPSLHSTSSAAAPVPGLPRASQPAHVIRDDAEAIAVAHALAPRLAQGASERDQLR
RWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAADPSLGQITQNHLGFVA
AVRTVSDPEQQRRFFADFLRGVRWGNAFSESGSKRAADFETRFVDAGDHVIVTGKKFYST
GALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWSAFGQRTTLSGTVIIDQVKVPKT
HLIPAYKGYLEPSADGAIFQIIQAAVDVGIARAAIADTQDFVRTKSRPWIDSQRDHAWED
PYSIQAIGDLQIRLHASEALLERAGRAIDAAVAAPDAQSVAHAQILTAEAKVLSTEIAIH
ATNKLFELAGTRSTLGQYNLDRHWRNARTHTLHDPVRWKYAIVGNYYLNGVKPPFHAWS