Protein Info for HSERO_RS04620 in Herbaspirillum seropedicae SmR1

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 136 to 154 (19 residues), see Phobius details PF12625: Arabinose_bd" amino acids 27 to 203 (177 residues), 127.5 bits, see alignment E=1e-40 PF12833: HTH_18" amino acids 253 to 330 (78 residues), 68.5 bits, see alignment E=7.5e-23 PF00165: HTH_AraC" amino acids 294 to 330 (37 residues), 30.9 bits, see alignment 3.4e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0923)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J0A3 at UniProt or InterPro

Protein Sequence (344 amino acids)

>HSERO_RS04620 AraC family transcriptional regulator (Herbaspirillum seropedicae SmR1)
MLKKTCDTAPIPFSFVEDALGCLVRQGYDTEPVLQEAGLTTDEVGPVSAEQYGALWLAIA
RITDDEFFGLSARPMRQGSFTLLCHAVLHAESLGQALRRALRFLRIVLDEPYGELRIDDG
KAHIILIKNRSPYPAFAYRTFLLLLLGLACWLVGRRIPLQCIDFSCALPEGRPDYLEFFG
VPVNFNKPRCCLSFESIYLDLPVIRSDAALKPFLRDVPANLLVRYRHDTGWVTRLRACLK
QSSPTDWTDFEAMAERLGVSPATLRRRLRDEGQSYASLKDEIRSGIAQTLLGANELSVAA
IAAQLGFTEASAFHRAFRKWTGKSPGVYRRDLLQVRVVDSQRCG