Protein Info for HSERO_RS04525 in Herbaspirillum seropedicae SmR1

Annotation: lysozyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 PF00959: Phage_lysozyme" amino acids 35 to 137 (103 residues), 39 bits, see alignment E=4.9e-14

Best Hits

Swiss-Prot: 58% identical to ENLYS_LAMBD: Endolysin (R) from Escherichia phage lambda

KEGG orthology group: None (inferred from 99% identity to hse:Hsero_0902)

Predicted SEED Role

"Phage lysin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J082 at UniProt or InterPro

Protein Sequence (176 amino acids)

>HSERO_RS04525 lysozyme (Herbaspirillum seropedicae SmR1)
VNPIDNRRAFLGMLRFSEGTSNSPTTRDRGYDQIVGRTRFTSYADHPRVRVWIPRIKNWS
TAAGGYQLLMRYYDFYRKQLRLTGFGPDVQDAIALQQIDERGALPDIDAGRVAAAIAKCK
NIWASLPGAGYGQFEHRYVDLEQAFTREGGQAVELPTLKTSEELHLAFVEAGGVLA