Protein Info for HSERO_RS04460 in Herbaspirillum seropedicae SmR1

Annotation: tail sheath protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 PF04984: Phage_sheath_1" amino acids 109 to 274 (166 residues), 73.4 bits, see alignment E=2.1e-24 PF17482: Phage_sheath_1C" amino acids 281 to 378 (98 residues), 56.7 bits, see alignment E=2.3e-19

Best Hits

Swiss-Prot: 58% identical to TSP_BPP2: Tail sheath protein (FI) from Escherichia phage P2

KEGG orthology group: K06907, (no description) (inferred from 100% identity to hse:Hsero_0889)

Predicted SEED Role

"Phage tail sheath monomer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J069 at UniProt or InterPro

Protein Sequence (391 amino acids)

>HSERO_RS04460 tail sheath protein (Herbaspirillum seropedicae SmR1)
MATDYHHGVRVIEINEGTRPIRTISTAVIGVIVTADDADAEAFPLDTAVLITNVVSAQAK
AGKTGTMRRVLEAIAAQAKPLVVLVRVAEAESEAEQTSLVIGGVSAEGRYTGVKALLAAQ
AKLGIKPRIIGAPFLDTKAVTNALASIAQTLRAFVYAYCWNCATAAAATAYRAEFGQREV
MLLWPEFVSWDTATSKDANISAVAFALGLRAKIDEQTGWHKTLSNVVVNGPTGISRDVFW
DLQDPATDAGVLNAKEVTTLINMSGYRFWGSRTCEVQGGYFPFENYTRTAQVLADTIAEA
HLVYVDLPMTPSLVKDLVASINAKFRSLKASGYIIDGEAWFDDKYNDKDTLKAGKLTIDY
SYTPVPPVENLLFQQRITDQYLADFAARVAA