Protein Info for HSERO_RS04345 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 transmembrane" amino acids 12 to 27 (16 residues), see Phobius details PF03486: HI0933_like" amino acids 9 to 400 (392 residues), 467.2 bits, see alignment E=1.1e-143 PF07992: Pyr_redox_2" amino acids 9 to 168 (160 residues), 32.6 bits, see alignment E=1.5e-11 PF00890: FAD_binding_2" amino acids 10 to 58 (49 residues), 29.7 bits, see alignment 1e-10 TIGR00275: flavoprotein, HI0933 family" amino acids 11 to 399 (389 residues), 390.8 bits, see alignment E=3.4e-121 PF13450: NAD_binding_8" amino acids 13 to 43 (31 residues), 23.7 bits, see alignment (E = 1.2e-08)

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 100% identity to hse:Hsero_0865)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8J046 at UniProt or InterPro

Protein Sequence (402 amino acids)

>HSERO_RS04345 membrane protein (Herbaspirillum seropedicae SmR1)
MSKTNPNHFDVAIIGAGAAGMMCAAVAGQRGRRVVLIDHAGKLAEKIRISGGGRCNFTNV
GAGPQHYLSQNPHFCRSALSRYTPQDFIGLVKRHRIGFHEKHKGQLFCDDSAEDIIAMLK
AECDAGNVSWRMPCTVQEVGKSSEHFRIATSAGEIQAASLVIATGGLSIPKIGATDFAYR
IARQFDLKLVETRPGLVPLTFDGKAWQSLTELAGIALEVEVETGAKKERGHFLEDLLFTH
RGLSGPAILQISSYWKPGTPLTLNLLPQLDVAETLIDGKGTIKKNLGNILAQWLPNRLAE
GWLKINGFDAGGRIADMPDKSLKKLGDSLNRWVILPSGSEGYRKAEVTLGGVDTRELSQQ
TMMANKVPGLHVIGEAMDVTGWLGGYNFQWAWASGVAAGSAV