Protein Info for HSERO_RS04040 in Herbaspirillum seropedicae SmR1

Annotation: pilus assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR02520: type IVB pilus formation outer membrane protein, R64 PilN family" amino acids 58 to 591 (534 residues), 497.6 bits, see alignment E=1.9e-153 PF07655: Secretin_N_2" amino acids 229 to 319 (91 residues), 46 bits, see alignment E=6.3e-16 PF00263: Secretin" amino acids 419 to 563 (145 residues), 44.6 bits, see alignment E=1.3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0807)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZY9 at UniProt or InterPro

Protein Sequence (597 amino acids)

>HSERO_RS04040 pilus assembly protein (Herbaspirillum seropedicae SmR1)
MKLPILLPLVVVMAGCSALADRIEGNVNQEGDRATRLSRDVGRTAPGSVLPSTPLVKHES
GIWLGKTAIKLGQPSLPPIFYEPTTFDRTINSLTELAERITLRSGLPSKVTPDALEVSSA
AFRLRGGGMPLRPGMMGAGPAPAGGAPVAMLPLPLGAPGEGQSSPVQPGRGPAASTGQTQ
PTFTDLPNGVRIAYNSGSLKGLLDTAAARFGVSWKFSEGVIQFFHTESRNFQISAIPGDS
TFSATVTSGATSTGGTAGTNGGGGSGGGSGGAGSGGGGVNANNTQNTAVASKLSVYTGIE
SAIKVMLSPYGKVLASPATGSITVVDTPDSLDRIATYIDGENKSLSRQIAINVTVLSVTL
SDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGLVSFTAGIPSSGTSGFSGSQAVIQAL
SQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQSLQSSLVAQVGTTTSLTPGVVTAGFN
MSILPHMLTNGTVMLQFSTDISTLRRIRQITASTDSSGRATALIESPELDTRNFLQRVAM
KSNETLIISGFEQTDENLGRSGVGDPKNLLLGGGVSAATNKEVIVVLITPVAMGSAS