Protein Info for HSERO_RS03975 in Herbaspirillum seropedicae SmR1

Annotation: flagellar biosynthesis protein FliP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 12 to 41 (30 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 195 to 217 (23 residues), see Phobius details TIGR01102: type III secretion apparatus protein, YscR/HrcR family" amino acids 13 to 215 (203 residues), 244 bits, see alignment E=6.4e-77 PF00813: FliP" amino acids 14 to 215 (202 residues), 206.2 bits, see alignment E=2.5e-65

Best Hits

Swiss-Prot: 41% identical to HRCR_RALSO: Hypersensitivity response secretion protein HrcR (hrcR) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03226, type III secretion protein SctR (inferred from 100% identity to hse:Hsero_0794)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZJ3 at UniProt or InterPro

Protein Sequence (220 amino acids)

>HSERO_RS03975 flagellar biosynthesis protein FliP (Herbaspirillum seropedicae SmR1)
MLSGQFDVVSFSVLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIA
LALSVFIMAPTVQEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQRE
MFLASAKKLWPKEAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLL
MALGMQQVSPQTITIPLKLLLFTLVGGWAKLLNALAMSYV