Protein Info for HSERO_RS03770 in Herbaspirillum seropedicae SmR1

Annotation: type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 TIGR03363: type VI secretion-associated protein, ImpA family" amino acids 19 to 368 (350 residues), 369.3 bits, see alignment E=1.5e-114 PF06812: ImpA_N" amino acids 23 to 145 (123 residues), 124.6 bits, see alignment E=1.2e-40

Best Hits

KEGG orthology group: K11902, type VI secretion system protein ImpA (inferred from 100% identity to hse:Hsero_0755)

Predicted SEED Role

"Uncharacterized protein ImpA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZF4 at UniProt or InterPro

Protein Sequence (375 amino acids)

>HSERO_RS03770 type VI secretion protein (Herbaspirillum seropedicae SmR1)
MKLPTLKSLLGGKPAMSAIEPLLNPINDNAPAGEDLSFTADLDAIAEARRFDDPTLDQGE
WVIDIKEADWPFVEQHCARLLEGRSKDLRLAVWYSEAACKTRGLRGLGDGFLLVAGLFDR
FWDNMYPQSEEGDHDQRVGNLTWLLARSVAMSREIALTEGRGSAYSLIDFEAARTRAANA
ERIANEGGQPEEGVKLAVMEAARKRSSHAFYEAMLADSQYCVQALEQLEKSVDARLGVNG
PGFSAAREALIAVRETVARFAADTGLRSPQLQDSAASGAAADASAPPTSVEETPPAGAMM
QQGPIRTRAEAIAQLRAVAEFFRRTEPHSPVAHLADKAAQWGEMPLHAWLKSVIKDDSTL
SHVEELLGLLPPRRE