Protein Info for HSERO_RS03705 in Herbaspirillum seropedicae SmR1

Annotation: EvpB family type VI secretion protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 18 to 490 (473 residues), 725 bits, see alignment E=2.1e-222 PF05943: VipB" amino acids 67 to 369 (303 residues), 450.8 bits, see alignment E=2e-139 PF18945: VipB_2" amino acids 379 to 489 (111 residues), 154.8 bits, see alignment E=9.6e-50

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 100% identity to hse:Hsero_0742)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZE1 at UniProt or InterPro

Protein Sequence (495 amino acids)

>HSERO_RS03705 EvpB family type VI secretion protein (Herbaspirillum seropedicae SmR1)
MSAQLHSETAAAPAAASASLLDDIVEQSKVAKSASEHDRAKDLITELVNQVMEGTVVVSS
NLSATLDARIAELDKLISSQVSAIMHAPEFQKLEGSWTGLNYLVRNTTVGENQKIKILNA
TKKELVKDFNSALEFDQSAMFKKVYEEEFGTFGGAPFGVLLGDFEITRQPEDMYFIEQMS
RIAAASHAPFVTAASPELFGLESYADLGKPRDLSKVFDTVEYAKWKSFRESEDSRYVGLT
LPRFLGRLPFNPKDGTTVEGFNFVEDVDGSDHSKYLWCNAAYAFGTKLTKAFEDFGWCAA
IRGVEGGGLVEDLPTHTFKTDEGEVALKCPTEIAITDRREKELSDLGFISLVHCKNTDYA
AFFGAQSAQKPKKYNTDSANANAVLSSQLQYIFAVSRIAHYMKSMMRDKIGSFAAASNVE
DFLNRWISQYVLLDDNATQEAKAQFPLREASVQVSEVPGRPGVYRAVSFLRPHFQLDELS
VSLRLVAELPQAGKS