Protein Info for HSERO_RS03560 in Herbaspirillum seropedicae SmR1

Annotation: TonB-denpendent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07715: Plug" amino acids 45 to 132 (88 residues), 30.3 bits, see alignment E=5.3e-11 PF00593: TonB_dep_Rec" amino acids 207 to 666 (460 residues), 88.9 bits, see alignment E=6.9e-29

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 100% identity to hse:Hsero_0712)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZB1 at UniProt or InterPro

Protein Sequence (709 amino acids)

>HSERO_RS03560 TonB-denpendent receptor (Herbaspirillum seropedicae SmR1)
MQSTPCACAIALAFTVCGDVFASGDEQTPLPAITVRGAKPSMTPPSADSAALLNDQPGYA
TAAGGGVSALPVLNGFAADRLKTRLDGMEVTAACGNQMNAPMSYMPPAQVGMTRVIAGIT
PVSVGGDSIGGTIELNSPAPQFASQPGQWLTKGGFSASARSVNSEVSASVNATVASDQLS
VAYVASQSRAESYVNGNGDKVLSSLYQSNNHALTLAARGEGQQLVLKVGQQYIPYQGFPN
EYMDMTGNRSTFANLGYERRFDWGRLSGKLYWQRTEHEMGFFGTERRGNMPMQTQGRDLG
YALRADIDLAADSSSVLRVGHEYHSFHLDDVWPPVAGSMMMSPRTYVNINGGKRDRFALF
AEWEHKLDARWSTLLGLRDELVKSDAGNVQSYGTNMMNQPDLNAANAFNARSHAKTDNNI
DLTALARLEADAGSRYEFGYARKTRSPNLYERYTWGRGGMAMRMTNWFGDGNGYVGDIDL
KPEVAHTLSGTADWHSEDSEGGEGSEGSERRWFFRLTPYFSYVENYIDADPLGRFNPYRV
AAASGAYLQFANHDARLYGINAAWKWPLWRAAGLGDIAFTGKAGLTRGKRVDGGNLYHMM
PLNILAALEQTWGAWSNRAELNYVARKSRVDSNRLEPVTASYSVVNLKSSYRFNQHISVT
AGVSNLFNRNYAEPLGGVYLAGLAQARSGSLQALPGYGRSLDVGVNVSF