Protein Info for HSERO_RS03420 in Herbaspirillum seropedicae SmR1

Annotation: cytochrome B561

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 signal peptide" amino acids 7 to 11 (5 residues), see Phobius details transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 45 to 63 (19 residues), see Phobius details amino acids 87 to 118 (32 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details PF01292: Ni_hydr_CYTB" amino acids 3 to 174 (172 residues), 114.2 bits, see alignment E=3.2e-37

Best Hits

KEGG orthology group: K12262, cytochrome b561 (inferred from 100% identity to hse:Hsero_0685)

Predicted SEED Role

"Cytochrome B561"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ84 at UniProt or InterPro

Protein Sequence (174 amino acids)

>HSERO_RS03420 cytochrome B561 (Herbaspirillum seropedicae SmR1)
MDRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACAR
LLWRLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLP
LPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRILP