Protein Info for HSERO_RS03265 in Herbaspirillum seropedicae SmR1

Annotation: transcription regulator protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF00072: Response_reg" amino acids 15 to 128 (114 residues), 60.6 bits, see alignment E=8e-20 PF13432: TPR_16" amino acids 175 to 231 (57 residues), 27.4 bits, see alignment 1.9e-09 PF14559: TPR_19" amino acids 179 to 246 (68 residues), 49 bits, see alignment E=3.2e-16 PF09976: TPR_21" amino acids 205 to 302 (98 residues), 30.2 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0654)

Predicted SEED Role

"FIG00715394: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYL3 at UniProt or InterPro

Protein Sequence (542 amino acids)

>HSERO_RS03265 transcription regulator protein (Herbaspirillum seropedicae SmR1)
MSLVPFSHISALRSLIIDDMPTMRQNIRMHLGQLGVTKVDQAATPDEAIRFVQSGNYDLI
ICDYNLNKESNGQQLLEFFRTQNMLSPTCMFIMVTAESGYNLVASAAEFQPDAYMLKPLT
ASRIAERVDRLLEKQHAMLPVTEKMKRKDISGAIAECDNVLKAAPKWIVEIMKTKGTLLI
EQRRVDEAREVYKQALGMRDDLVWAKIGLARCNIVAGQMDDARAIVEDVLAQNKQFIAAY
DLLAQIDEAQGNQEGALEALTRSSEIIPSARRSRLVGDVAYRSGHLDQAREAYDKVLKHT
KGSLTAQPTDLLSLAQVHIDSGDADAALRLLESAPRRYEESKLFISAQAAVQAQAYVQLG
DTISAQQAFETARQAAGEETSDMATLALAKAAFSMGRDEEGSKLIADAVKSDHENKTLLM
LARKVLADTGRANLADELVDGAVKHCMSVIAEANALMRSAKPDESLAKLEEALASMPENT
GVLLASAQLHLLWMSQRGWNEEYVKRVRRYLATLDRLIPGNDRVAKMHKFLRDTLSKVAP
KS