Protein Info for HSERO_RS03050 in Herbaspirillum seropedicae SmR1

Annotation: hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00702: Hydrolase" amino acids 17 to 205 (189 residues), 80.5 bits, see alignment E=3.4e-26 PF13419: HAD_2" amino acids 20 to 210 (191 residues), 54.1 bits, see alignment E=3.4e-18 TIGR01509: HAD hydrolase, family IA, variant 3" amino acids 94 to 211 (118 residues), 44.9 bits, see alignment E=1.3e-15 TIGR01549: HAD hydrolase, family IA, variant 1" amino acids 111 to 205 (95 residues), 43.4 bits, see alignment E=4.7e-15 PF13242: Hydrolase_like" amino acids 166 to 234 (69 residues), 45.2 bits, see alignment E=1e-15

Best Hits

KEGG orthology group: K07025, putative hydrolase of the HAD superfamily (inferred from 100% identity to hse:Hsero_0610)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYG9 at UniProt or InterPro

Protein Sequence (244 amino acids)

>HSERO_RS03050 hydrolase (Herbaspirillum seropedicae SmR1)
MKPSASTLPASPAASPIQAVLFDLDDTLWAIEPVLVRAETLLYDWLRQHAPAVAAAHTIA
SLRERRMALMQTDPAYRINLWKLRHTALSEVFREHDVDLALVDPAMALFSEARSTVALFD
DVEPALLRLKGKLTLGSVSNGFADLERIGLAGHFGVSIAAHRFGRAKPDPAIFHAACEAL
QVAPGATVYVGDDPLLDVQGAQQAGLKAVWMNRFGRVLPEDIRPDAVCRDLHELHDWLEA
QSAA