Protein Info for HSERO_RS02990 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13416: SBP_bac_8" amino acids 42 to 294 (253 residues), 85.2 bits, see alignment E=1.4e-27 PF13531: SBP_bac_11" amino acids 44 to 283 (240 residues), 64.3 bits, see alignment E=3e-21 PF01547: SBP_bac_1" amino acids 44 to 279 (236 residues), 47.6 bits, see alignment E=4.7e-16 PF13343: SBP_bac_6" amino acids 80 to 298 (219 residues), 155 bits, see alignment E=5.2e-49

Best Hits

KEGG orthology group: K02055, putative spermidine/putrescine transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_0598)

Predicted SEED Role

"Ferric iron ABC transporter, iron-binding protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IYF7 at UniProt or InterPro

Protein Sequence (335 amino acids)

>HSERO_RS02990 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
MFLKRVIQTAAGALLLSASLAAQAQTAICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKN
SGQALAQLTAEKASPVADFAYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFT
IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQALGG
TLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV
IPSEGTVTVPYVVALVKNAPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRASAMSKEAES
RFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR