Protein Info for HSERO_RS02675 in Herbaspirillum seropedicae SmR1

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 112 to 113 (2 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 175 to 192 (18 residues), see Phobius details amino acids 204 to 225 (22 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 280 to 305 (26 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 344 to 364 (21 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 410 to 434 (25 residues), see Phobius details amino acids 453 to 473 (21 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 423 (398 residues), 151.1 bits, see alignment E=2e-48

Best Hits

KEGG orthology group: K08169, MFS transporter, DHA2 family, multidrug resistance protein (inferred from 100% identity to hse:Hsero_0537)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IY96 at UniProt or InterPro

Protein Sequence (484 amino acids)

>HSERO_RS02675 transporter (Herbaspirillum seropedicae SmR1)
MELFSDHPNDEGLPGKQRRRAMLAVMTATTMAVFDGTIINVALPQISQALQTSAAVSIWV
SNAYLLATAMTLAAFAALSSRIGFRAQFSAGLAVFTLASLGCALSGSVTLLILMRILQGL
GGAAMLSIAPAIHRTIFPNRLLGRILGLNAVLVAASTAVGPVLGGTLLAMLGWEWIFAIN
VPLGVLAVWLAWNAVPDTRKPAQAAFDLAGALWSALAMGALIMAADTCARFAEPGQGSGA
AFTAAAYAVTALLAGLAFVRGQRRAADPLLPLDIFANPRFSLAALTSLASFVGQGIAFVA
LPFLFQNAYGYTAFESAALFTPWPLGIVLVAPHAGRLADRHSPALLSSLGLALFALGLVL
LALLPDQAQPWDIGWRALVCGMGFGFFQSPNNREMLGNVSRERSGNASGVLAIMRTFGQC
LGAALLGVILAVRTAAAVAQGELQMNPVQDGEAIRIALWLAAAATALATAVSASRLRRKA
ESPA