Protein Info for HSERO_RS02460 in Herbaspirillum seropedicae SmR1

Annotation: UDP pyrophosphate phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 18 to 20 (3 residues), see Phobius details amino acids 56 to 74 (19 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 170 to 183 (14 residues), see Phobius details amino acids 205 to 229 (25 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details PF02673: BacA" amino acids 23 to 278 (256 residues), 244.9 bits, see alignment E=5.5e-77

Best Hits

Swiss-Prot: 72% identical to UPPP2_RHILO: Undecaprenyl-diphosphatase 2 (uppP2) from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 100% identity to hse:Hsero_0493)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.27

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXD8 at UniProt or InterPro

Protein Sequence (290 amino acids)

>HSERO_RS02460 UDP pyrophosphate phosphatase (Herbaspirillum seropedicae SmR1)
MANVCSAGLDIGFASLSYAQIGLLGIVQGITELLPISSTAHMRIVPALLGWHDPGSAFSA
AMQLAALAAVISYFRRDVSAVTGGSLAAWRRRDFNDPMFRLAVAIILATIPIGIAGLSLS
HVLNACGSPLRSLTVIGWSCVGMAILLAISEMVCRHRRSVDQMRLRDALIVGLAQVGALI
PGVSRSGSTLTAALFLNFRREEAARFSFLLGLPAIALAGLKELAVLLHAHIPLEAWGVLL
FGLLVASVSAFAAIWGLMKFLERFSTWPFIVYRAVLGAFLLVAVAQGWLQ