Protein Info for HSERO_RS02220 in Herbaspirillum seropedicae SmR1

Annotation: xylulokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 490 PF00370: FGGY_N" amino acids 1 to 244 (244 residues), 244 bits, see alignment E=1.8e-76 TIGR01312: xylulokinase" amino acids 3 to 479 (477 residues), 577.5 bits, see alignment E=9.5e-178 PF02782: FGGY_C" amino acids 254 to 439 (186 residues), 116.1 bits, see alignment E=1.8e-37

Best Hits

KEGG orthology group: K00854, xylulokinase [EC: 2.7.1.17] (inferred from 100% identity to hse:Hsero_0446)

Predicted SEED Role

"Xylulose kinase (EC 2.7.1.17)" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization or Xylose utilization (EC 2.7.1.17)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.17

Use Curated BLAST to search for 2.7.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IX96 at UniProt or InterPro

Protein Sequence (490 amino acids)

>HSERO_RS02220 xylulokinase (Herbaspirillum seropedicae SmR1)
MYLGIDLGTSEVKAVVIDAQGSLVALAGSTLNVARPHPRWSEQAPADWWQATCDTVAKLR
TQLGSERFGSIRAIGLSGQMHGAVLLDERDEVLRPAILWSDSRSAPECAELESRAPRLHG
IAGNLAMPGFTAPKLLWVARHEPQLFARIATVLLPKDWLRLKMTGRKVSDPSDAAGTLWL
DVEGRNWSDELLAASGMRRDQMPALVDGSAVSGSLLPEVAQAWGLRSDVIVAGGAGDGAA
SAVGIGAVKPGDGFLSLGTSGVLFVVNDRFRPNPGRAIHAFCHTLPQRWHQMSVMLSAAS
CLRWFCRLCSVDEKSLLAEIEQLDEQACNNAPLFLPYLSGERTPHNDPYATGVFHGLTPE
HQRAALGYAVLEGVAFGMVDGLDALRAAGTDVAELSLVGGGARSAYWAQLLADALQVRIV
THVGSEAGGALGAARLAWLADGGDEAEVCRKPAQQALYQPDPARHAALQARLQRYRAIYA
PFAPLHGEGH