Protein Info for HSERO_RS01775 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 62 to 89 (28 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details PF01595: CNNM" amino acids 12 to 184 (173 residues), 154.2 bits, see alignment E=4.7e-49 PF00571: CBS" amino acids 277 to 329 (53 residues), 32 bits, see alignment 2e-11 PF03471: CorC_HlyC" amino acids 349 to 419 (71 residues), 56 bits, see alignment E=5e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0358)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IW86 at UniProt or InterPro

Protein Sequence (434 amino acids)

>HSERO_RS01775 hypothetical protein (Herbaspirillum seropedicae SmR1)
LETVPIWVQVLALFILILLSAFFSMTETALMAANRHRLRHLAKQGNRAAITILWLLDRTE
RLLSLVLIANTAINALATALVTALAIAAFGNHQRVITAATACVAALLIIFAEIVPKVIGA
TYPERISLFTGFILKPLMRVAKPLIWFVNLFVSAILRLLRIKTGARAAEQRISPEELRSI
VLEGGSFIPQKHKSILLNLFDLEKISVEDVMTPRSQVEALNLAAPVDDILHQLATCYHNK
LPVFEGEINHIVGILHVRKTVSLFRREEEISHDDIRELLSAPYYVPVETDVFTQLQYFQE
NHERLGVVVDEYGEVQGLVTLEDIIEEMIGEFTTSSPGSSGEGFGWDKDGACLLEGSTTL
RDINKRLGLQLPLDGPKTINGLLLEYLQDIPEASVAVKMDGCVIEIVQVQNQAIRMVKLI
ALAQAPGAASAAPD