Protein Info for HSERO_RS01560 in Herbaspirillum seropedicae SmR1

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1071 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 342 to 362 (21 residues), see Phobius details amino acids 369 to 391 (23 residues), see Phobius details amino acids 397 to 419 (23 residues), see Phobius details amino acids 440 to 461 (22 residues), see Phobius details amino acids 472 to 499 (28 residues), see Phobius details amino acids 551 to 571 (21 residues), see Phobius details amino acids 880 to 900 (21 residues), see Phobius details amino acids 907 to 927 (21 residues), see Phobius details amino acids 933 to 956 (24 residues), see Phobius details amino acids 979 to 998 (20 residues), see Phobius details amino acids 1010 to 1036 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1036 (1034 residues), 1184.9 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 4 to 1044 (1041 residues), 1175.8 bits, see alignment E=0 PF02355: SecD_SecF" amino acids 342 to 498 (157 residues), 21.8 bits, see alignment E=1.7e-08 PF03176: MMPL" amino acids 347 to 498 (152 residues), 44 bits, see alignment E=2.3e-15 amino acids 861 to 1036 (176 residues), 31.7 bits, see alignment E=1.2e-11

Best Hits

KEGG orthology group: None (inferred from 84% identity to azo:azo2569)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IW43 at UniProt or InterPro

Protein Sequence (1071 amino acids)

>HSERO_RS01560 transporter (Herbaspirillum seropedicae SmR1)
MNISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIA
ETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRL
PEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLF
GSGNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQ
GRLKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGA
NALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVII
FLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVE
RNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST
VISAFNSLTLSPALAALLLKGHGDKPDWLTRQMDRFLGGFFIRFNRFFNRASDNYGHGVT
GVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSEEVMR
KMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIAASLN
KKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAKEPAL
GPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVYQVRA
QADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADINGGPAP
GYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLVFLVLAALY
ESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFAREL
EMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGMLG
VTLFGLFLTPVFYVLLRTIDRRALHSASHHEAPMTAGTHIAHAAPDAQDDR