Protein Info for HSERO_RS00775 in Herbaspirillum seropedicae SmR1

Annotation: cytochrome C biogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 291 to 313 (23 residues), see Phobius details amino acids 327 to 344 (18 residues), see Phobius details amino acids 354 to 375 (22 residues), see Phobius details TIGR03144: cytochrome c-type biogenesis protein CcsB" amino acids 145 to 382 (238 residues), 253.6 bits, see alignment E=1.2e-79 PF01578: Cytochrom_C_asm" amino acids 176 to 379 (204 residues), 174.7 bits, see alignment E=1.1e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0155)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcsA/ResC" in subsystem Biogenesis of c-type cytochromes or Experimental tye

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUW2 at UniProt or InterPro

Protein Sequence (384 amino acids)

>HSERO_RS00775 cytochrome C biogenesis protein (Herbaspirillum seropedicae SmR1)
MELTQHNQAYAEEQGFFRRLGVLDWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAPT
FAWLGWHWKPVRLLMLVIAVLSLGAIALYGGALELADKKFFLKYMLSSQSAILWMSALFC
LSTLFYWGGLATTAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLYE
VFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPALQ
SWWMKIHVPANFIGYGTFALAAMVAVAYLLRQKGYLADRLPSLEVLDDVMYKAIAVGFAF
FTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQAAAWWALVG
LLVTTFAFLGVNMFLSGLHSYGEL