Protein Info for HSERO_RS00670 in Herbaspirillum seropedicae SmR1

Annotation: preprotein translocase subunit SecY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 116 to 136 (21 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details TIGR00967: preprotein translocase, SecY subunit" amino acids 19 to 427 (409 residues), 440.6 bits, see alignment E=2.9e-136 PF00344: SecY" amino acids 73 to 415 (343 residues), 397.2 bits, see alignment E=2.8e-123

Best Hits

Swiss-Prot: 68% identical to SECY_ECO57: Protein translocase subunit SecY (secY) from Escherichia coli O157:H7

KEGG orthology group: K03076, preprotein translocase subunit SecY (inferred from 100% identity to hse:Hsero_0134)

MetaCyc: 68% identical to Sec translocon subunit SecY (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Preprotein translocase secY subunit (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUU1 at UniProt or InterPro

Protein Sequence (443 amino acids)

>HSERO_RS00670 preprotein translocase subunit SecY (Herbaspirillum seropedicae SmR1)
LATTPQLAKGAAKGFPWGRLWFLLGALIVYRIGAHIPVPGIDPTQLAQLFKQNQGGILGM
FNMFSGGALSRFTIFALGIMPYISASIIMQLLSVVSPQLEALKKEGEAGRRKITQYTRYG
TLVLATFQALGIAVALESQAGLVLDPGLAFRLTTVVTLITGTMFLMWLGEQITERGLGNG
ISIIIFAGIAAGLPNALGGLFELVRTGSMNALSAILICVIVALVTFLVVFIERGQRKILV
NYAKRQVGNKIYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFTSGDTSNPFIRF
LKDLAASMAPGEPIHALLYAVAIVFFCFFYTALVFNSKETADNLKKSGAFVPGIRPGDQT
ARYIDKILMRLTLAGAVYITLVCLLPEFLIARWKVPFYFGGTSLLIIVVVTMDFMAQVQN
YVMSQQYESLLRKANFKGGMTPR