Protein Info for HSERO_RS00390 in Herbaspirillum seropedicae SmR1

Annotation: serine/threonine protein phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 175 to 192 (18 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details PF01569: PAP2" amino acids 80 to 192 (113 residues), 28 bits, see alignment E=1.7e-10 PF00782: DSPc" amino acids 350 to 427 (78 residues), 35.5 bits, see alignment E=8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0078)

Predicted SEED Role

"Ser/Thr and Tyr protein phosphatase (dual specificity)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITW7 at UniProt or InterPro

Protein Sequence (439 amino acids)

>HSERO_RS00390 serine/threonine protein phosphatase (Herbaspirillum seropedicae SmR1)
LPWKRGVAWLLLLGPLFFLSYGFANHAAAARASVPSFFYGWERHIPFLPWTILPYWSIDL
LYGFSFLCCRTARETDRHALRLLTTQVIAVACFLAFPLRFAFERPATDGLFGALFASLTA
FDLPYNQAPSLHIALLVLIWVQFARLRASWPWRWLIHGWALLIGLSVLTTWQHHFIDIPT
GAMLGLFCLWLWPDEGRTPLQRDGQGSSRRTRLALAYGLGAAVALGLAYGVRPLAALLGW
SALALAIVAWNYAYAGTAGFQKRDGRRSLAAAWLLAPHALGAWINARLWTRRHPQPDAIT
DDVWLGPLPGKAGMSAGRFAALCDLSAELPAPRGHWRYASHPWLDLVAPEADQLLAAARS
IESLRGHGPVLVACALGYSRSAGAVAAWLCLSRRCPDMAGALALLAERRPAVVINDALRE
RLLEVEQRLLKENPMPELR