Protein Info for HSERO_RS00025 in Herbaspirillum seropedicae SmR1

Annotation: reverse transcriptase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 997 PF00078: RVT_1" amino acids 179 to 327 (149 residues), 39.1 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_0006)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITP5 at UniProt or InterPro

Protein Sequence (997 amino acids)

>HSERO_RS00025 reverse transcriptase (Herbaspirillum seropedicae SmR1)
MYKVTLADLYVAYRKAKAEAFYENTHFHALAFTEYEQKLDENLRGLLTILLDDASPWSRL
DIQGDYAYLPKSVDCEPWENGHEGHFRALNPLLDWQQRFQEKRIPAIAKLRLVIRPTVNF
QIISALWIIKVGHKFDAVINTEVSHGNRLRRRSRKIDEKWSARGPLNMTAAGLFAPYFSA
YRKWRETGLNRMEESLKQGKDILAITMDLEQFYHRVAPTFLLRKSFLQSIRLKLTTFERQ
FTTDLLDAIALWYEQTPDFKVRPQGALPVGLSASKIISNVLLANFDNAILQKIKPIYYGR
YVDDIFLVFENTKLAVNAKEVTQRIAKAMHPMLTIPENQEGSPSIRLKIPYAMDSELIFA
GTKQKIFSLSSPHGLDLIQHIREQIRIQSSEYRLLPVVPNTAVEMASRALLATPDASLQV
DALRKADVVSVRRLGLSLLLRDIEAYSADLRPDSWHSIRAEFYGLVKRHVITPAGFFEFI
SYVPRVFGLMLSCGDTVEAEQLIFELNDVVNILRKTTTAGSEEQAKNFDLAVYQYALALQ
QAGYQAATERSVELDITYLRVLKKLSSLYPSIEIPRTTQAFKKVVHEILLSDWGRRPYKD
YWYQTQEDDEIGPPVPDDVEIRRNLRLGGIRRFRKGFTDLKTPHWPALAFPTRPLRIDEI
ALVAPKVFESSYLFKLAVMSLRGAKVISKEELGIPPPSPIDIEEKLVRFSVPAPAKDMIR
VAVTSFETSHEQWEAAAKGKQDRSVARYRNLNELINRILKEGKRPHYIILPELSIPLRWA
LRVARKLAMNDVSILAGVEYNKDRNTGRLRNDCLVSLVTNWPGYRGNIARLQPKFIPAHG
ERDALKKIRMNRKKLQLFEPKGMLAKPTVYSHGGFFFSILICSDLTNIEHRHQLRGEIDT
LFALEWNSDLKTFSPLVEATANDLHAYVVQINNRSYGDSRIRSPSRIDHARDVVQVKGGA
SDYYVIGEIDYHALRLEQSSTKEKARFKPIPIGFKMS