Protein Info for HMPREF1078_RS16255 in Parabacteroides merdae CL09T00C40

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 231 to 260 (30 residues), see Phobius details amino acids 304 to 328 (25 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 19 to 413 (395 residues), 186.2 bits, see alignment E=4.7e-59

Best Hits

KEGG orthology group: None (inferred from 51% identity to pgt:PGTDC60_0867)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>HMPREF1078_RS16255 ABC transporter permease (Parabacteroides merdae CL09T00C40)
MNKIGLIIKREYLRRVSKKSFLLLTFLTPFLFAALVFVPLWLSTIKGDDVKQVAISDTTG
KYAPLFKDTEEYTFITEKGSSLEEYRKNPDKEIFAFLNITDDLLQNPTAATLYSQKQIPM
GLKNTIDKTLSEYLKDEKLASYNIDNLKQIIEDSKINFNIKTIKWDEDGSEKSTSAEVAS
ILGMILTFIIYMFIIMYGGMVMQGVMEEKTNRIIEVMISSVKPFDLMMGKIIGIGFVGLT
QVFLWGILTTVLVSGSLFFFGGNTSPEDMMTAQMTAQGINDVAAGSSDISIQVQEIINSI
NFGMIGTCFVLYFIGGYLLYAALFAAIGSALEQQEDTQQFMTPIMLLMAFSLYAGIYSMN
NPDGPLAFWCSMIPFTSPIVMMVRLPFDIPVWELALSFALLFATAILIIWFSAKIYRVGI
LMYGKKPSIKEMIKWVKYK