Protein Info for HMPREF1078_RS13510 in Parabacteroides merdae CL09T00C40

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 66 (30 residues), see Phobius details amino acids 79 to 103 (25 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 140 to 161 (22 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 209 to 233 (25 residues), see Phobius details amino acids 243 to 260 (18 residues), see Phobius details amino acids 271 to 288 (18 residues), see Phobius details amino acids 294 to 321 (28 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 284 (268 residues), 114.4 bits, see alignment E=2.9e-37 amino acids 213 to 388 (176 residues), 58.2 bits, see alignment E=3.6e-20

Best Hits

KEGG orthology group: None (inferred from 77% identity to pdi:BDI_2032)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>HMPREF1078_RS13510 MFS transporter (Parabacteroides merdae CL09T00C40)
MKDCKPILWNRNFVQCCISYFLMNFSFYMLMPTMPVYLVEVLGISTANVGIALSSYTIGL
LCVRPFSGFLVDCFSRKPLYLFAFFVFAFMFGGYLIATTMLTIMAVRFVQGGFMGLTSVA
GNTIAIDVIPSSRRGEGMGFYGLTINLAMSLAPLAAVAIYGKGGFNPVVFIGWMAAFIGV
GSVCLIRYPKREKVPRPHFSLDRFILVKALPAALAYILVAIPYGMITSFVVLYGKEIEVA
NPGYFFIYMAVGVGTSRLVSGRLVDHGKIHWVSVCSAVCLLVTFTVFATVHQSWVFFVCA
LMIGIGYGVGVPAFQCLFVNVAPHNMRGTATSTYLTSFDLGVGIGMLSAGFIASCAGLAV
AYGVGAGCCLASLGVYLRWVRPSYEKHKLLV