Protein Info for HMPREF1078_RS09975 in Parabacteroides merdae CL09T00C40

Annotation: CDC27 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 725 PF13181: TPR_8" amino acids 557 to 584 (28 residues), 14.5 bits, see alignment (E = 1.9e-05) amino acids 589 to 616 (28 residues), 13 bits, see alignment (E = 5.4e-05) PF13174: TPR_6" amino acids 625 to 651 (27 residues), 14.5 bits, see alignment (E = 2.6e-05) PF13432: TPR_16" amino acids 633 to 681 (49 residues), 17.7 bits, see alignment 2.3e-06

Best Hits

KEGG orthology group: None (inferred from 75% identity to pdi:BDI_1476)

Predicted SEED Role

"FIG00898328: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (725 amino acids)

>HMPREF1078_RS09975 CDC27 family protein (Parabacteroides merdae CL09T00C40)
MTLQEINKAYNRIVGSLDSKELKNAFDSLQALIAGSREYSFQDKLNELQDTYKYMLRYRI
EGAKDPMQEQIYNNLQASTYELADSVKQKAVAVESPLSYYSRRRSLNIQPSLTYKQLHDQ
LFLEHEAGKHKESDAFNSLIFNKIWVSSFLKREEAEDIRGMLHDNALPFTTGSQIVSALM
LGLQEAFDREKILLLFDAASHPNEEVKVRALISILITLYTYRKRTQLYPQIADRLAALAE
TPGFIKTIRTIILRFILARETEKITRKLQDEIIPEMLKLSPKLSKKINLNELTPEDLTGN
EMNPEWESFFSDSTLGKKMVEFGELQQEGADVMHSTFVHLKNFPFFHELSNWLLPFTIEH
SYFDDQFTPDNEAEKQMLDSMTFAAFMCNSDKYSLYFSMMQLPKEARKMMMNQFDSQATE
MIQQNKEELISKRGKQDTIIGQYIQDLYRFFKLYPGHLDFTDIFTMPLDFHNLAILRPYI
SDKESLTNIAEYYLRKNYFSDALTIFNQLAKTDQDSDILFQKIGYCKQMEGDLKGALEAY
LHADLLNSESKWVIRRIAGCYRSLKQPEEALKYYRRYEALNPDNLSVQISIGHCHLELKD
YNEALKCFFKVDYLDNKSHKAWRPIAWCSFLTGKYDQARNYYKKILDNQPHAQDLLNAGH
TEWALQNIKGALSFYQQAVQMENGNILKFQEQFSQDVADLLIAGIEEAEVALMLDQLRYK
IEGAI